Three dimensional display can also be used to display scientific data sets, or to illustrate mathematical functions. Anaglyph images are suitable both for paper presentation, and non-moving video display. They can easily be included in science books, and viewed with cheap anaglyph glasses.

Also, chemical structures, particularly for large systems, can be difficult to represent in two dimensions without omitting geometric information. Therefore most chemistry computer software can output anaglyph images, and some chemistry textbooks include them.

Today, there are more advanced solutions for 3D imaging available, like shutter glasses together with fast monitors. These solutions are already extensively used in science. Still, anaglyph images provide a cheap and comfortable way to view scientific visualizations.