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Netherlands Bioinformatics Centre

Netherlands Bioinformatics Centre
Typenot-for-profit organisation
Location
Websitewww.nbic.nl

The Netherlands Bioinformatics Centre or NBIC[1] (2003-2013) was a Dutch, government-funded organization, that coordinated all academic work on bioinformatics in the Netherlands.[2] NBIC consisted of programs for research (BioRange), for education (BioWise), and for support (BioAssist). NBIC partners are all Dutch universities and university hospitals, and some commercial entities. The NBIC central office was hosted by the Center for Molecular and Biomolecular Informatics (CMBI) at the Radboud University Nijmegen Medical Centre.

History

In 2003 NBIC was launched[3] as a not-for-profit organization, to strengthen and organize the bioinformatics research in the Netherlands. NBIC is one of the four enabling technology centres that were initiated by the Netherlands Genomics Initiative (NGI)[4] to improve the genomics-based research in the Netherlands. The other three technology centres are: the Netherlands Proteomics Centre (NPC),[5] the Netherlands Metabolomics Centre (NMC)[6] and the Netherlands Consortium for Systems Biology (NCSB).[7] Most services moved to the Dutch Techcentre for Life Sciences in 2015.[8]

Funding

The Netherlands Bioinformatics Centre was funded by the Dutch government through the Netherlands Genomics Initiative (NGI)[9] and the BSIK[10](knowledge infrastructures) programme.[citation needed]

Support

The support department of NBIC, BioAssist, consists of task forces that bring together experts in the different fields of Bioinformatics. Together, these people identify common problems in their field that they set out to solve in a collaborative way. BioAssist also has a group, BioInformatics Research Support (BRS),[11][12] that helps biological and medical professionals with short bioinformatics projects.

Education

The education part of NBIC, BioWise, organizes courses and trainings at different levels. They provide awareness training at schools,[13] collaborate with the different bioinformatics education programs at the universities in the Netherlands, and organize trainings for PhD students. Also, subject-specific trainings and conferences are organized, either nationally or with other international partners like the Swiss Institute of Bioinformatics.

Achievements

Organising Bioinformatics research

So far, NBIC has achieved its goal of bringing together the different bioinformatics research groups in the Netherlands. It is now also partnering up with Dutch universities of Applied Sciences (UAS) in the LOBIN network. in July 2011, four UASes have joined.[14]

Bioinformatics software

A wide variety of bioinformatics software has been created by people involved in NBIC.[15] NBIC also hosts a service to coordinate software development (Trac server with software releases and project documentation).[16] Many tools are also made available through NBIC's own open Galaxy server[17]

Industrial links

First steps have been made to include commercial entities, among others, via the Bioinformatics Industrial Users Platform (BIUP). The BIUP, though still in its start-up phase in mid-2011, has already attracted partners such as DSM.

Community Building

A large part of NBIC's efforts focus on developing new or strengthening existing bio-informatics communities. For example, NBIC hosted the 2011 Galaxy Community Conference.[18] The Netherlands Bioinformatics for Proteomics Platform (for short NBPP) is a joint initiative of the Netherlands Bioinformatics Centre (NBIC) and the Netherlands Proteomics Centre (NPC).

The inaugural meeting of the Global Organisation for Bioinformatics Learning, Education and Training (GOBLET) was held at NBIC in November 2012.[19]

References

  1. ^ NBIC Website
  2. ^ van Gelder, Celia W. G.; Hooft, Rob W. W.; van Rijswijk, Merlijn N.; van den Berg, Linda; Kok, Ruben G.; Reinders, Marcel; Mons, Barend; Heringa, Jaap (15 September 2017). "Bioinformatics in the Netherlands: the value of a nationwide community". Briefings in Bioinformatics. 20 (2): 375–383. doi:10.1093/bib/bbx087. PMC 6433734. PMID 28968694.
  3. ^ Netherlands Genomics Initiative information on NBIC
  4. ^ Overview NGI Genomics Centres
  5. ^ Website Netherlands Proteomics Centre
  6. ^ Website Netherlands Metabolomics Centre
  7. ^ "Website Netherlands Consortium for Systems Biology". Archived from the original on 2012-01-25. Retrieved 2012-02-27.
  8. ^ "NBIC: BioAssist activities moved to DTL Data programme". www.nbic.nl. Retrieved 2 March 2018.
  9. ^ Website Netherlands Genomics Initiative
  10. ^ Website BSIK: Besluit subsidies Investeringen Kennisinfrastructuur
  11. ^ "Bioscience Omics Facility". 23 November 2012.
  12. ^ "NBIC: Bioinformatics Research Support". www.nbic.nl. Archived from the original on 2010-10-31.
  13. ^ Bioinformatica in de klas
  14. ^ LOBIN members
  15. ^ list of key software products of NBIC
  16. ^ NBIC trac server
  17. ^ NBIC Galaxy server
  18. ^ Galaxy Community Conference 2011 homepage
  19. ^ "BTN/GOBLET meeting | GOBLET". www.mygoblet.org. Retrieved 24 August 2016.
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Netherlands Bioinformatics Centre
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