List of cis-regulatory RNA elements
This is a list of cis-regulatory RNAs. These are RNA motifs which regulate nucleic acid regions on the same molecule, as opposed to trans-acting motifs which regulate a distal molecule. Some of these RNAs are broadly distributed while others are single RNA families.
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[edit]A
[edit]- Actino-pnp RNA motif
- AdoCbl riboswitch
- Alfalfa mosaic virus coat protein binding (CPB) RNA
- Alfalfa mosaic virus RNA 1 5′ UTR stem-loop
- Alpha operon ribosome binding site
- Antizyme RNA frameshifting stimulation element
- APC internal ribosome entry site (IRES)
- Aphthovirus internal ribosome entry site (IRES)
- Apolipoprotein B (apoB) 5′ UTR cis-regulatory element
- AtoC RNA motif
- ATPC RNA motif
- AU-rich element
B
[edit]- Bag-1 internal ribosome entry site (IRES)
- Bamboo mosaic potexvirus (BaMV) cis-regulatory element
- Bamboo mosaic virus satellite RNA cis-regulatory element
- Bovine leukaemia virus RNA packaging signal
C
[edit]- Citrus tristeza virus replication signal
- CrcB RNA motif
- Ctgf/hcs24 CAESAR
- Cap-independent translation element
E
[edit]- Enterobacteria greA leader
- Enterobacteria rnk leader
- Enteroviral 3′ UTR element
- Enterovirus 5′ cloverleaf cis-acting replication element
- Enterovirus cis-acting replication element
F
[edit]G
[edit]H
[edit]- Heat shock protein 70 (Hsp70) internal ribosome entry site (IRES)
- Hepatitis C alternative reading frame stem-loop
- Hepatitis C stem-loop IV
- Hepatitis C virus (HCV) cis-acting replication element (CRE)
- Hepatitis C virus 3'X element
- Hepatitis C virus stem-loop VII
- Hepatitis E virus cis-reactive element
- HIV gag stem loop 3 (GSL3)
- HopC RNA motif
- Human parechovirus 1 (HPeV1) cis regulatory element (CRE)
- Human rhinovirus internal cis-acting regulatory element (CRE)
I
[edit]J
[edit]L
[edit]M
[edit]N
[edit]P
[edit]- P27 cis-regulatory element
- Potassium channel RNA editing signal
- Potato virus X cis-acting regulatory element
- PotC RNA motif
- Poxvirus AX element late mRNA cis-regulatory element
- Prion pseudoknot
- Pseudomonas rnk leader
- Pseudomonas rpsL leader
- PyrG leader
- PyrR binding site
R
[edit]- R2 RNA element
- RbcL 5′ UTR RNA stabilising element
- Red clover necrotic mosaic virus translation enhancer elements
- Regulatory region of repZ gene
- Retrovirus direct repeat 1 (dr1)
- Ribosomal protein L10 leader
- Ribosomal protein L13 leader
- Ribosomal protein L19 leader
- Ribosomal protein L20 leader
- Ribosomal protein L21 leader
- Ribosomal S15 leader
- RNase E 5′ UTR element
- RncO
- Rne-II RNA motif
- Rotavirus cis-acting replication element (CRE)
- Rous sarcoma virus (RSV) primer binding site (PBS)
- RtT RNA
- Rubella virus 3′ cis-acting element
S
[edit]- S-element
- SerC leader
- Simian virus 40 late polyadenylation signal (SVLPA)
- SpeF leader
- Spi-1 (PU.1) 5′ UTR regulatory element
- Sxy 5′ UTR element
T
[edit]- T-box leader
- Togavirus 5′ plus strand cis-regulatory element
- Tombusvirus 3′ UTR region IV
- Tombusvirus 5′ UTR
- Tombusvirus internal replication element (IRE)
- Tobamovirus IRES
- Transfer RNA-like structures
- TrkB IRES
- Turnip crinkle virus (TCV) core promoter hairpin (Pr)
- Turnip crinkle virus (TCV) repressor of minus strand synthesis H5
U
[edit]V
[edit]W
[edit]Y
[edit]See also
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